miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|166076686|gb|FD525662.1|FD525662 CAGTCCATTATTACCGGCAAGAAGCCAACTTGTCCGTCCATCATCAACGCAGTTTTCCCACGAACAACATCGCACCATGC
ATACATCGTACTCCCTCCGTTCCTAAATATAAGTCTTTTTTTTAGAGGTTTCATTATAGGACTACATACTGATGTATTTA
GACATACTTTAAAGTATAGATTCACTCATTTTGTTTTGTATGTAGTCTCTTAGTGAAATCTCTTAAAAGACTTATATTTA
GGAACGGAGGGAGTACATCACTGACAATAATTTTCGACTGTTCAATGTTACTAGTACTACTGATAAAGTATGTGATAACA
GCAGAGAACCAGAGACCAACGTAGACCGCGAGCAGCGCTTAGAGTTACGTCGGCGGTCACTCGGTTGTGGCTGCAGCGGC
GGCCTTGTCGAGGGTGTTGGCGATGTCGATGACGAATCGATACCTGACGTCAGCCTTGGCAAGGCGCTCCATCGCTGTGT
TCACGTACTCCGCGCTTATCACCTCGATGTCTGCCGTCACGCCGTGCTTCGCCGCGAGGTCCAGCATCTCCTGGGTGTCC
CTCATGCCGCCGATGCAGCTCCCGGCCAGGGTCTTGTTCCTGGCAACCAGAGCAAAGGGAGGGACCTCGATAGGCTGCTC
TGGGAGGCCGACCATGATCATCTTGCCGTTGGGCTTGAGTAGCC




Most similar to sp|Q0J6T3|CADH5_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9FMN4|TCLOT_ARATH Thioredoxin-like protein Clot OS=Arabidopsis
           thaliana GN=At5g42850 PE=2 SV=1
          Length = 134

 Score =  199 bits (506), Expect(3) = 5e-56
 Identities = 94/98 (95%), Positives = 96/98 (97%)
 Frame = +1

Query: 25  MTLKKLDANPSTLESILQELKSDETNRSKINFILFLADNDPTTGQSWCPDCVRAEPVIYK 204
           MTLKK+DANPSTLES LQELKSDET+RSKINFILFLADNDPTTGQSWCPDCVRAEPVIYK
Sbjct: 1   MTLKKVDANPSTLESSLQELKSDETSRSKINFILFLADNDPTTGQSWCPDCVRAEPVIYK 60

Query: 205 TLEEFPEEVNLIRAYAGDRPTWRTPAHPWRVDSRFKLT 318
           TLEEFPEEV LIRAYAGDRPTWRTPAHPWRVDSRFKLT
Sbjct: 61  TLEEFPEEVKLIRAYAGDRPTWRTPAHPWRVDSRFKLT 98



 Score = 33.9 bits (76), Expect(3) = 5e-56
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = +2

Query: 320 GVPTLVRWDGDSG*GRL 370
           GVPTLVRWDGDS  GRL
Sbjct: 99  GVPTLVRWDGDSVKGRL 115



 Score = 26.9 bits (58), Expect(3) = 5e-56
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +3

Query: 357 VKDVLEXIKAHLSYLILSLFAPS 425
           VK  LE  +AHL +LIL L APS
Sbjct: 111 VKGRLEDHQAHLPHLILPLLAPS 133


>sp|Q5Z9Z3|OCLOT_ORYSJ Thioredoxin-like protein Clot OS=Oryza sativa
           subsp. japonica GN=Os06g0320000 PE=2 SV=1
          Length = 139

 Score =  101 bits (252), Expect(2) = 5e-23
 Identities = 48/103 (46%), Positives = 68/103 (66%), Gaps = 5/103 (4%)
 Frame = +1

Query: 25  MTLKKLDANPSTLESILQEL-KSDETNRSKINFILFLADNDPTTGQSWCPDCVRAEPVIY 201
           MT++K+DA  +  ++   +L  + +    K+  +LFLAD D ++ Q+WCPDC  AEPVIY
Sbjct: 1   MTVEKVDATVADFDAHFDKLFAAGDDAEGKVKLLLFLADRDASSNQTWCPDCNVAEPVIY 60

Query: 202 KTLEEFPE----EVNLIRAYAGDRPTWRTPAHPWRVDSRFKLT 318
             +E   +    +V L+RAY GD+PTWR PAHPWR D RF+LT
Sbjct: 61  DRVEAAAKGKEKDVVLLRAYVGDKPTWRDPAHPWRADPRFRLT 103



 Score = 26.9 bits (58), Expect(2) = 5e-23
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 320 GVPTLVRWDGDSG*GRLG 373
           GVPTL+RW+  +   RLG
Sbjct: 104 GVPTLIRWENGAAAARLG 121


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q0J6T3|CADH5_ORYSJ Putative cinnamyl alcohol dehydrogenase 5
           OS=Oryza sativa subsp. japonica GN=CAD5 PE=3 SV=2
          Length = 354

 Score =  158 bits (399), Expect = 4e-38
 Identities = 79/91 (86%), Positives = 86/91 (94%)
 Frame = -3

Query: 682 LLKPNGKMIMVGLPEQPIEVPPFALVARNKTLAGSCIGGMRDTQEMLDLAAKHGVTADIE 503
           LLKPNGKMI+VGLPE+P+E+PPFALVA NKTLAGSCIGGM DT EM+DLAAKHGVTA+IE
Sbjct: 260 LLKPNGKMILVGLPEKPMEIPPFALVASNKTLAGSCIGGMADT-EMIDLAAKHGVTAEIE 318

Query: 502 VISAEYVNTAMERLAKADVRYRFVIDIANTL 410
           VI A+YVNTAMERLAKADVRYRFVIDI NTL
Sbjct: 319 VIGADYVNTAMERLAKADVRYRFVIDIGNTL 349